Index

_

__init__() (dire_rapids.betti_curve.UnionFind method) (dire_rapids.dire_cuvs.DiReCuVS method) (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.dire_pytorch_memory_efficient.DiRePyTorchMemoryEfficient method) (dire_rapids.DiReCuVS method) (dire_rapids.DiRePyTorch method) (dire_rapids.DiRePyTorchMemoryEfficient method) (dire_rapids.ReducerConfig method) (dire_rapids.ReducerRunner method) (dire_rapids.utils.elgen method) (dire_rapids.utils.ReducerConfig method) (dire_rapids.utils.ReducerRunner method)

__post_init__() (dire_rapids.ReducerRunner method) (dire_rapids.utils.ReducerRunner method)

A

available_cytof() (dire_rapids.ReducerRunner static method) (dire_rapids.utils.ReducerRunner static method)

available_sklearn() (dire_rapids.ReducerRunner static method) (dire_rapids.utils.ReducerRunner static method)

C

categorical_labels (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute) compute_betti_curve() (in module dire_rapids.betti_curve) compute_betti_curve_cpu() (in module dire_rapids.betti_curve) compute_betti_curve_fast() (in module dire_rapids.betti_curve) compute_betti_curve_gpu() (in module dire_rapids.betti_curve) compute_context_measures() (in module dire_rapids.metrics) compute_global_metrics() (in module dire_rapids.metrics) compute_h0_h1_knn() (in module dire_rapids.metrics) compute_knn_accuracy() (in module dire_rapids.metrics) compute_knn_score() (in module dire_rapids.metrics)

compute_local_metrics() (in module dire_rapids.metrics) compute_neighbor_score() (in module dire_rapids.metrics) compute_stress() (in module dire_rapids.metrics) compute_svm_accuracy() (in module dire_rapids.metrics) compute_svm_score() (in module dire_rapids.metrics) config (dire_rapids.ReducerRunner attribute) (dire_rapids.utils.ReducerRunner attribute) create_dire() (in module dire_rapids) (in module dire_rapids.dire_pytorch) cuvs_index (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

D

device (dire_rapids.dire_pytorch.DiRePyTorch attribute) (dire_rapids.DiRePyTorch attribute) dire_rapids module dire_rapids.betti_curve module dire_rapids.dire_cuvs module dire_rapids.dire_pytorch module dire_rapids.dire_pytorch_memory_efficient module

dire_rapids.metrics module dire_rapids.utils module DiReCuVS (class in dire_rapids) (class in dire_rapids.dire_cuvs) DiRePyTorch (class in dire_rapids) (class in dire_rapids.dire_pytorch) DiRePyTorchMemoryEfficient (class in dire_rapids) (class in dire_rapids.dire_pytorch_memory_efficient)

E

elgen (class in dire_rapids.utils)

evaluate_embedding() (in module dire_rapids.metrics)

F

find() (dire_rapids.betti_curve.UnionFind method) fit() (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.DiRePyTorch method) fit_transform() (dire_rapids.dire_cuvs.DiReCuVS method) (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.dire_pytorch_memory_efficient.DiRePyTorchMemoryEfficient method) (dire_rapids.DiReCuVS method) (dire_rapids.DiRePyTorch method) (dire_rapids.DiRePyTorchMemoryEfficient method)

L

logger (dire_rapids.dire_pytorch.DiRePyTorch attribute) (dire_rapids.DiRePyTorch attribute)

M

make_knn_graph_cpu() (in module dire_rapids.metrics) make_knn_graph_gpu() (in module dire_rapids.metrics) max_points (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute) module dire_rapids dire_rapids.betti_curve dire_rapids.dire_cuvs dire_rapids.dire_pytorch dire_rapids.dire_pytorch_memory_efficient dire_rapids.metrics dire_rapids.utils

N

name (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute)

R

rand_point_disk() (in module dire_rapids.utils) rand_point_ell() (in module dire_rapids.utils) rand_point_sphere() (in module dire_rapids.utils) reducer_class (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute) reducer_kwargs (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute)

ReducerConfig (class in dire_rapids) (class in dire_rapids.utils) ReducerRunner (class in dire_rapids) (class in dire_rapids.utils) run() (dire_rapids.ReducerRunner method) (dire_rapids.utils.ReducerRunner method)

T

threshold_subsample_gpu() (in module dire_rapids.metrics)

U

union() (dire_rapids.betti_curve.UnionFind method) UnionFind (class in dire_rapids.betti_curve) use_cuml (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

use_cuvs (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

V

visualize (dire_rapids.ReducerConfig attribute) (dire_rapids.utils.ReducerConfig attribute)

visualize() (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.DiRePyTorch method)

W

welford_finalize_gpu() (in module dire_rapids.metrics)

welford_gpu() (in module dire_rapids.metrics) welford_update_gpu() (in module dire_rapids.metrics)