Index

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__init__() (dire_rapids.dire_cuvs.DiReCuVS method) (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.dire_pytorch_memory_efficient.DiRePyTorchMemoryEfficient method) (dire_rapids.DiReCuVS method) (dire_rapids.DiRePyTorch method) (dire_rapids.DiRePyTorchMemoryEfficient method) (dire_rapids.ReducerConfig method) (dire_rapids.ReducerRunner method)

__post_init__() (dire_rapids.ReducerRunner method)

A

available_cytof() (dire_rapids.ReducerRunner static method)

available_sklearn() (dire_rapids.ReducerRunner static method)

B

betti_curve() (in module dire_rapids.metrics)

C

categorical_labels (dire_rapids.ReducerConfig attribute) compute_bottleneck() (in module dire_rapids.metrics) compute_context_measures() (in module dire_rapids.metrics) compute_dtw() (in module dire_rapids.metrics) compute_emd() (in module dire_rapids.metrics) compute_global_metrics() (in module dire_rapids.metrics) compute_h0_h1_atlas_cpu() (in module dire_rapids.atlas_cpu) compute_h0_h1_knn() (in module dire_rapids.metrics) compute_knn_accuracy() (in module dire_rapids.metrics) compute_knn_score() (in module dire_rapids.metrics) compute_local_metrics() (in module dire_rapids.metrics) compute_neighbor_score() (in module dire_rapids.metrics)

compute_persistence_diagrams() (in module dire_rapids.metrics) compute_persistence_diagrams_fast() (in module dire_rapids.metrics) compute_stress() (in module dire_rapids.metrics) compute_svm_accuracy() (in module dire_rapids.metrics) compute_svm_score() (in module dire_rapids.metrics) compute_twed() (in module dire_rapids.metrics) compute_wasserstein() (in module dire_rapids.metrics) config (dire_rapids.ReducerRunner attribute) create_dire() (in module dire_rapids) (in module dire_rapids.dire_pytorch) cuvs_index (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

D

device (dire_rapids.dire_pytorch.DiRePyTorch attribute) (dire_rapids.DiRePyTorch attribute) dire_rapids module dire_rapids.atlas_cpu module dire_rapids.dire_cuvs module dire_rapids.dire_pytorch module

dire_rapids.dire_pytorch_memory_efficient module dire_rapids.metrics module DiReCuVS (class in dire_rapids) (class in dire_rapids.dire_cuvs) DiRePyTorch (class in dire_rapids) (class in dire_rapids.dire_pytorch) DiRePyTorchMemoryEfficient (class in dire_rapids) (class in dire_rapids.dire_pytorch_memory_efficient)

E

evaluate_embedding() (in module dire_rapids.metrics)

F

fit() (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.DiRePyTorch method) fit_transform() (dire_rapids.dire_cuvs.DiReCuVS method) (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.dire_pytorch_memory_efficient.DiRePyTorchMemoryEfficient method) (dire_rapids.DiReCuVS method) (dire_rapids.DiRePyTorch method) (dire_rapids.DiRePyTorchMemoryEfficient method)

G

get_available_persistence_backends() (in module dire_rapids.metrics)

get_persistence_backend() (in module dire_rapids.metrics)

L

logger (dire_rapids.dire_pytorch.DiRePyTorch attribute) (dire_rapids.DiRePyTorch attribute)

M

make_knn_graph_cpu() (in module dire_rapids.metrics) make_knn_graph_gpu() (in module dire_rapids.metrics) max_points (dire_rapids.ReducerConfig attribute) module dire_rapids dire_rapids.atlas_cpu dire_rapids.dire_cuvs dire_rapids.dire_pytorch dire_rapids.dire_pytorch_memory_efficient dire_rapids.metrics

N

name (dire_rapids.ReducerConfig attribute)

R

reducer_class (dire_rapids.ReducerConfig attribute) reducer_kwargs (dire_rapids.ReducerConfig attribute)

ReducerConfig (class in dire_rapids) ReducerRunner (class in dire_rapids) run() (dire_rapids.ReducerRunner method)

S

set_persistence_backend() (in module dire_rapids.metrics)

T

threshold_subsample_gpu() (in module dire_rapids.metrics)

U

use_cuml (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

use_cuvs (dire_rapids.dire_cuvs.DiReCuVS attribute) (dire_rapids.DiReCuVS attribute)

V

visualize (dire_rapids.ReducerConfig attribute)

visualize() (dire_rapids.dire_pytorch.DiRePyTorch method) (dire_rapids.DiRePyTorch method)

W

welford_finalize_gpu() (in module dire_rapids.metrics)

welford_gpu() (in module dire_rapids.metrics) welford_update_gpu() (in module dire_rapids.metrics)